PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.096040.1
Common NameCsa_4G006410, LOC101206573
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family FAR1
Protein Properties Length: 670aa    MW: 77316.6 Da    PI: 5.7382
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.096040.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.51.6e-2160142290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     fY+ YAke GF vr+s++ ++ +++e ++ ++ Cs  g++++++ +     r+r+etrtgC a++k +++++ +w+++++el+HnH ++
  Cucsa.096040.1  60 FYSCYAKEQGFGVRVSNTWYR-KSKEKYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLIN 142
                     9***************99997.66779**************99888.....***********************************775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-1860142IPR004330FAR1 DNA binding domain
PfamPF105511.1E-22263356IPR018289MULE transposase domain
PROSITE profilePS509669.928550586IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-5552583IPR007527Zinc finger, SWIM-type
SMARTSM005754.1E-5561588IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MDGVSLNTEP VGDEEGDYFE IEGDSVIADY VDQSGIFEGE NPLPPAVGME FESYEDVYYF  60
YSCYAKEQGF GVRVSNTWYR KSKEKYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF  120
RLMDTRRWRI IEVELDHNHL INPTSGKFYK SHKNLGVGTK RLLQLDSVEE VQKVRLFQTV  180
VIDADHNGYL DVDEGEFGNR VDNSNQLKLN KGDALAIEDF LCQAQLTDSN FFYVLDLNEK  240
GSLRNLFWVS SRSRAAYTYF SDVVYMDTSC LANKYQVPLV SIIGVNHHGQ CVLFGCGLLA  300
METVESYIWL FRAWLTSVLG RPPQVIIADQ HEELQIALTD VFPRASHCIS LSDIMRKVPQ  360
KLRGMLEYET IEIAIFRAVY HSLKPEQFDA LWEGMIQQHG LGGHKWLQEL YEHRRQWVPV  420
FMKDTFLAGV LSIVSGDVVP FFFQEYLGEH TSLKQFFEQY DQAIQSHHQL EVLADEDSKN  480
SSLMLESRCY FEAQLCKLYT NEILEKFERE VEGMYCCFNR RKLNAEAPLM TYIVKEHVEM  540
EGSRRDAREF EVSYNESDME VQCNCGLFNS KGYLCRHALS VLTQNGIKEI PAQYILQRWR  600
KDVKRNYILD YSYTTSIDTN SQIHRYDHIY RSIVQVIEEG RKSKEKYGIA VQGIKDILSK  660
LRLGTDTSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652996.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A0A0KVM30.0A0A0A0KVM3_CUCSA; Uncharacterized protein
STRINGPOPTR_0001s20880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]